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Fencer Intel
medium 4.4

CVE-2026-116742 json

HTSlib through 1.24 Heap Out-of-Bounds Write via Truncated .gzi Index Count

published 14d ago modified 13d ago also EUVD-2026-110490

cvss
4.4
version 3.1, CNA
cisa kev
Not listed
not in CISA's catalog
epss
0.1%
EPSS 0.1% chance of exploitation in 30 days, percentile 2%
public exploits
0
none known

Summary

HTSlib through 1.24 contains a heap out-of-bounds write and read vulnerability in bgzf_index_load_hfile() in bgzf.c that allows attackers to corrupt heap memory by supplying a crafted .gzi index entry count. A count of 0xFFFFFFFF truncates noffs to zero, causing writes past a malloc(0) buffer and an offs[-1] read in bgzf_useek(), resulting in heap corruption or crashes in tools like samtools and bcftools.

Patch / fix

  • htslib htslib 1.24.1

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Vendor advisories

What the vendors themselves say about their products: affected, fixed or not affected, and what to do.

red hat product security vex CVE-2026-116742 updated cvss 4.4

htslib: htslib: Denial of Service via crafted index file

  • Red Hat All currently supported Red Hat products
    not affected: vulnerable code not present

Red Hat CSAF VEX © Red Hat, Inc., from https://security.access.redhat.com/data/csaf/v2/vex/; changed: reduced to product statuses and remediations. CC BY 4.0 · csaf

CISA SSVC

Exploitation
none
Automatable
no
Technical impact
partial
Assessed
13d ago

Exploit prediction

0.12% chance of exploitation in the next 30 days, higher than 2% of all scored CVEs (FIRST EPSS, 2026-11-09).

CVSS scores

assigned by version score vector
CNA 4.0 4.8 CVSS:4.0/AV:L/AC:L/AT:N/PR:N/UI:P/VC:N/VI:L/VA:L/SC:N/SI:N/SA:N
CNA 3.1 4.4 CVSS:3.1/AV:L/AC:L/PR:N/UI:R/S:U/C:N/I:L/A:L
CNA 4.0 4.8 CVSS:4.0/AV:L/AC:L/AT:N/PR:N/UI:P/VC:N/VI:L/VA:L/SC:N/SI:N/SA:N/E:X/CR:X/IR:X/AR:X/MAV:X/MAC:X/MAT:X/MPR:X/MUI:X/MVC:X/MVI:X/MVA:X/MSC:X/MSI:X/MSA:X/S:X/AU:X/R:X/V:X/RE:X/U:X

Affected products

  • samtools htslib

Classification

Weakness

References

Sources

Fencer Intel keeps one entry per vulnerability: the CVE id wins, then GHSA, and records that alias each other are merged, except that two CVEs always keep separate entries. The same data is available as JSON.

CPEs and fixed versions use Anchore's correction of NVD's data: Added CPE configurations because not yet analyzed by NVD.